pytest-wdl
1.0.0
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User manual
pytest_wdl
pytest-wdl
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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L
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P
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R
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U
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W
A
assert_contents_equal() (pytest_wdl.core.DataFile method)
B
BamDataFile (class in pytest_wdl.data_types.bam)
C
chdir() (in module pytest_wdl.utils)
cleanup() (pytest_wdl.core.UserConfiguration method)
context_dir() (in module pytest_wdl.utils)
create_data_file() (pytest_wdl.core.DataResolver method)
CromwellExecutor (class in pytest_wdl.executors.cromwell)
D
DATA_TYPES (in module pytest_wdl.core)
DataDirs (class in pytest_wdl.core)
DataFile (class in pytest_wdl.core)
DataManager (class in pytest_wdl.core)
DataResolver (class in pytest_wdl.core)
download_file() (in module pytest_wdl.utils)
E
ensure_path() (in module pytest_wdl.utils)
env_map() (in module pytest_wdl.utils)
Executor (class in pytest_wdl.core)
EXECUTORS (in module pytest_wdl.core)
F
find_executable_path() (in module pytest_wdl.utils)
find_in_classpath() (in module pytest_wdl.utils)
find_project_path() (in module pytest_wdl.utils)
G
get_cromwell_outputs() (pytest_wdl.executors.cromwell.CromwellExecutor static method)
get_dict() (pytest_wdl.core.DataManager method)
get_executor_defaults() (pytest_wdl.core.UserConfiguration method)
get_workflow() (in module pytest_wdl.executors)
get_workflow_imports() (in module pytest_wdl.executors)
get_workflow_inputs() (in module pytest_wdl.executors)
H
http_headers() (pytest_wdl.core.UrlLocalizer property)
I
import_dirs() (in module pytest_wdl.fixtures)
import_paths() (in module pytest_wdl.fixtures)
is_executable() (in module pytest_wdl.utils)
L
LinkLocalizer (class in pytest_wdl.core)
localize() (pytest_wdl.core.LinkLocalizer method)
(pytest_wdl.core.Localizer method)
(pytest_wdl.core.StringLocalizer method)
(pytest_wdl.core.UrlLocalizer method)
Localizer (class in pytest_wdl.core)
P
path() (pytest_wdl.core.DataFile property)
paths() (pytest_wdl.core.DataDirs property)
plugin_factory_map() (in module pytest_wdl.utils)
PluginFactory (class in pytest_wdl.utils)
project_root() (in module pytest_wdl.fixtures)
project_root_files() (in module pytest_wdl.fixtures)
proxies() (pytest_wdl.core.UrlLocalizer property)
pytest_wdl (module)
pytest_wdl.core (module)
pytest_wdl.data_types (module)
pytest_wdl.data_types.bam (module)
pytest_wdl.data_types.vcf (module)
pytest_wdl.executors (module)
pytest_wdl.executors.cromwell (module)
pytest_wdl.fixtures (module)
pytest_wdl.utils (module)
R
resolve() (pytest_wdl.core.DataResolver method)
resolve_file() (in module pytest_wdl.utils)
resolve_value_descriptor() (in module pytest_wdl.utils)
run_workflow() (pytest_wdl.core.Executor method)
(pytest_wdl.executors.cromwell.CromwellExecutor method)
S
safe_string() (in module pytest_wdl.utils)
StringLocalizer (class in pytest_wdl.core)
T
tempdir() (in module pytest_wdl.utils)
U
UrlLocalizer (class in pytest_wdl.core)
user_config() (in module pytest_wdl.fixtures)
user_config_file() (in module pytest_wdl.fixtures)
UserConfiguration (class in pytest_wdl.core)
V
VcfDataFile (class in pytest_wdl.data_types.vcf)
W
workflow_data() (in module pytest_wdl.fixtures)
workflow_data_descriptor_file() (in module pytest_wdl.fixtures)
workflow_data_descriptors() (in module pytest_wdl.fixtures)
workflow_data_resolver() (in module pytest_wdl.fixtures)
workflow_runner() (in module pytest_wdl.fixtures)
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